Package: TCGAgistic 0.0.0.9000

Sam El-Kamand

TCGAgistic: Easily access TCGA gistic data

Streams TCGA GISTIC2 copynumber data into the R session.

Authors:Sam El-Kamand [aut, cre]

TCGAgistic_0.0.0.9000.tar.gz
TCGAgistic_0.0.0.9000.zip(r-4.7)TCGAgistic_0.0.0.9000.zip(r-4.6)TCGAgistic_0.0.0.9000.zip(r-4.5)
TCGAgistic_0.0.0.9000.tgz(r-4.6-any)TCGAgistic_0.0.0.9000.tgz(r-4.5-any)
TCGAgistic_0.0.0.9000.tar.gz(r-4.7-any)TCGAgistic_0.0.0.9000.tar.gz(r-4.6-any)
TCGAgistic_0.0.0.9000.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
TCGAgistic/json (API)

# Install 'TCGAgistic' in R:
install.packages('TCGAgistic', repos = c('https://ccicb.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ccicb/tcgagistic/issues

On CRAN:

Conda:

2.40 score 5 stars 5 scripts 2 exports 22 dependencies

Last updated from:adf0782554. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK127
source / vignettesOK183
linux-release-x86_64OK135
macos-release-arm64OK156
macos-oldrel-arm64OK175
windows-develOK84
windows-releaseOK75
windows-oldrelOK84
wasm-releaseOK113

Exports:tcga_gistic_availabletcga_gistic_load

Dependencies:clidata.tableDNAcopyfarvergluegtablelabelinglatticelifecyclemaftoolsMatrixpheatmappingrprocessxpsR6RColorBrewerRhtslibrlangscalessurvivalviridisLite

Readme and manuals

Help Manual

Help pageTopics
List Available Datasetstcga_gistic_available
Load TCGA GISTIC datatcga_gistic_load