Package: TCGAgistic 0.0.0.9000

Sam El-Kamand

TCGAgistic: Easily access TCGA gistic data

Streams TCGA GISTIC2 copynumber data into the R session.

Authors:Sam El-Kamand [aut, cre]

TCGAgistic_0.0.0.9000.tar.gz
TCGAgistic_0.0.0.9000.zip(r-4.5)TCGAgistic_0.0.0.9000.zip(r-4.4)TCGAgistic_0.0.0.9000.zip(r-4.3)
TCGAgistic_0.0.0.9000.tgz(r-4.5-any)TCGAgistic_0.0.0.9000.tgz(r-4.4-any)TCGAgistic_0.0.0.9000.tgz(r-4.3-any)
TCGAgistic_0.0.0.9000.tar.gz(r-4.5-noble)TCGAgistic_0.0.0.9000.tar.gz(r-4.4-noble)
TCGAgistic_0.0.0.9000.tgz(r-4.4-emscripten)TCGAgistic_0.0.0.9000.tgz(r-4.3-emscripten)
TCGAgistic.pdf |TCGAgistic.html✨
TCGAgistic/json (API)

# Install 'TCGAgistic' in R:
install.packages('TCGAgistic', repos = c('https://ccicb.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ccicb/tcgagistic/issues

On CRAN:

Conda:

2.88 score 5 stars 1 packages 8 scripts 2 exports 25 dependencies

Last updated 2 years agofrom:adf0782554. Checks:9 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 26 2025
R-4.5-winOKMar 26 2025
R-4.5-macOKMar 26 2025
R-4.5-linuxOKMar 26 2025
R-4.4-winOKMar 26 2025
R-4.4-macOKMar 26 2025
R-4.4-linuxOKMar 26 2025
R-4.3-winOKMar 26 2025
R-4.3-macOKMar 26 2025

Exports:tcga_gistic_availabletcga_gistic_load

Dependencies:clicolorspacedata.tableDNAcopyfarvergluegtablelabelinglatticelifecyclemaftoolsMatrixmunsellpheatmappingrprocessxpsR6RColorBrewerRhtslibrlangscalessurvivalviridisLitezlibbioc

Readme and manuals

Help Manual

Help pageTopics
List Available Datasetstcga_gistic_available
Load TCGA GISTIC datatcga_gistic_load