{
  "_id": "6ad3166d90c8bbdf41a50f34",
  "Package": "TCGAgistic",
  "Title": "Easily access TCGA gistic data",
  "Version": "0.0.0.9000",
  "Authors@R": "person(\"Sam\", \"El-Kamand\", , \"selkamand@ccia.org.au\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"https://orcid.org/0000-0003-2270-8088\"))",
  "Description": "Streams TCGA GISTIC2 copynumber data into the R session.",
  "License": "MIT + file LICENSE",
  "Config/testthat/edition": "3",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.2.1",
  "biocViews": "",
  "URL": "https://github.com/CCICB/TCGAgistic",
  "BugReports": "https://github.com/CCICB/TCGAgistic/issues",
  "Config/pak/sysreqs": "libbz2-dev liblzma-dev xz-utils zlib1g-dev",
  "Repository": "https://ccicb.r-universe.dev",
  "Date/Publication": "2023-07-05 05:49:56 UTC",
  "RemoteUrl": "https://github.com/CCICB/TCGAgistic",
  "RemoteRef": "HEAD",
  "RemoteSha": "adf0782554c2d7916169cf81f69d19247047b7eb",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-10-17 06:29:32 UTC",
    "User": "root"
  },
  "Author": "Sam El-Kamand [aut, cre] (ORCID:\n<https://orcid.org/0000-0003-2270-8088>)",
  "Maintainer": "Sam El-Kamand <selkamand@ccia.org.au>",
  "_user": "ccicb",
  "_type": "src",
  "_file": "TCGAgistic_0.0.0.9000.tar.gz",
  "_fileid": "https://r2.ropensci.org/3b047a89df4cf474f5d10e8b441c5e87410535a628978e7e3189b5e0ae5128ac",
  "_filesize": 138329,
  "_sha256": "3b047a89df4cf474f5d10e8b441c5e87410535a628978e7e3189b5e0ae5128ac",
  "_expires": "2027-01-25T06:32:12.000Z",
  "_created": "2026-10-17T06:29:32.000Z",
  "_published": "2026-10-17T06:32:13.605Z",
  "_buildurl": "https://github.com/r-universe/ccicb/actions/runs/39009942079",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_jobs": [
    {
      "job": 117330701253,
      "time": 125,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "12092064991"
    },
    {
      "job": 117330701287,
      "time": 124,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12092527559"
    },
    {
      "job": 117330701368,
      "time": 117,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "12092875975"
    },
    {
      "job": 117330701279,
      "time": 106,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12092232971"
    },
    {
      "job": 117330218371,
      "time": 153,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12092806075"
    },
    {
      "job": 117330701305,
      "time": 80,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "12092447808"
    },
    {
      "job": 117330701342,
      "time": 77,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "12091923457"
    },
    {
      "job": 117330701363,
      "time": 79,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "12092866081"
    },
    {
      "job": 117330701330,
      "time": 74,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12092541493"
    }
  ],
  "_upstream": "https://github.com/CCICB/TCGAgistic",
  "_commit": {
    "id": "adf0782554c2d7916169cf81f69d19247047b7eb",
    "author": "selkamand <sam.elkamand@gmail.com>",
    "committer": "selkamand <sam.elkamand@gmail.com>",
    "message": "feat: added doi badge\n",
    "time": 1688536196
  },
  "_maintainer": {
    "name": "Sam El-Kamand",
    "email": "selkamand@ccia.org.au",
    "login": "selkamand",
    "bluesky": "@selkamand.bsky.social",
    "orcid": "0000-0003-2270-8088",
    "description": "",
    "uuid": 73202525
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "maftools",
      "role": "Imports"
    },
    {
      "package": "pingr",
      "role": "Imports"
    },
    {
      "package": "rlang",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    }
  ],
  "_owner": "ccicb",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 6,
  "_contributors": [
    {
      "user": "selkamand",
      "count": 10,
      "uuid": 73202525
    }
  ],
  "_userbio": {
    "uuid": 66937852,
    "type": "organization",
    "name": "Computational Biology Group @ Children's Cancer Insitute",
    "followers": 24,
    "description": "The Computational Biology Group @ Children's Cancer Insitute develop better tools for precision medicine. WGS, RNAseq, multi-omics, health data"
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/TCGAgistic"
  },
  "_devurl": "https://github.com/ccicb/tcgagistic",
  "_searchresults": 5,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/readme.html",
    "extra/readme.md",
    "extra/TCGAgistic.html",
    "LICENSE"
  ],
  "_cranurl": false,
  "_exports": [
    "tcga_gistic_available",
    "tcga_gistic_load"
  ],
  "_help": [
    {
      "page": "tcga_gistic_available",
      "title": "List Available Datasets",
      "topics": [
        "tcga_gistic_available"
      ]
    },
    {
      "page": "tcga_gistic_load",
      "title": "Load TCGA GISTIC data",
      "topics": [
        "tcga_gistic_load"
      ]
    }
  ],
  "_readme": "https://github.com/CCICB/TCGAgistic/raw/HEAD/README.md",
  "_rundeps": [
    "cli",
    "data.table",
    "DNAcopy",
    "farver",
    "glue",
    "gtable",
    "labeling",
    "lattice",
    "lifecycle",
    "maftools",
    "Matrix",
    "pheatmap",
    "pingr",
    "processx",
    "ps",
    "R6",
    "RColorBrewer",
    "Rhtslib",
    "rlang",
    "scales",
    "survival",
    "viridisLite"
  ],
  "_score": 2.4771212547196626,
  "_indexed": true,
  "_nocasepkg": "tcgagistic",
  "_universes": [
    "ccicb",
    "selkamand"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.0.0.9000",
      "date": "2026-10-17T06:31:25.000Z",
      "distro": "resolute",
      "commit": "adf0782554c2d7916169cf81f69d19247047b7eb",
      "fileid": "https://r2.ropensci.org/e80765761901af79a242dcf38847019ee8fe766ba476b127b12d1b5a818d10df",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ccicb/actions/runs/39009942079"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.0.0.9000",
      "date": "2026-10-17T06:31:25.000Z",
      "distro": "resolute",
      "commit": "adf0782554c2d7916169cf81f69d19247047b7eb",
      "fileid": "https://r2.ropensci.org/db8c70620605c3bd2fc3a566027afaa8c0b3372a21189bb78b91678af7dff94f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ccicb/actions/runs/39009942079"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.0.0.9000",
      "date": "2026-10-17T06:31:23.000Z",
      "commit": "adf0782554c2d7916169cf81f69d19247047b7eb",
      "fileid": "https://r2.ropensci.org/fe5fc9a3df41226b60cdd65fa6a511c75ffafe3f711729b364825caa80ee5226",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ccicb/actions/runs/39009942079"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.0.0.9000",
      "date": "2026-10-17T06:31:14.000Z",
      "commit": "adf0782554c2d7916169cf81f69d19247047b7eb",
      "fileid": "https://r2.ropensci.org/2dabae4ce42231ffec844ac850265147e384b2b60ae3a5fc04d7e35453bb7543",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ccicb/actions/runs/39009942079"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.0.0.9000",
      "date": "2026-10-17T06:31:07.000Z",
      "commit": "adf0782554c2d7916169cf81f69d19247047b7eb",
      "fileid": "https://r2.ropensci.org/8e8c96aa3aecf65842c2251886fa64f83f2f5b1e58c97bbd61f032cfee2a3931",
      "status": "success",
      "buildurl": "https://github.com/r-universe/ccicb/actions/runs/39009942079"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.0.0.9000",
      "date": "2026-10-17T06:30:35.000Z",
      "commit": "adf0782554c2d7916169cf81f69d19247047b7eb",
      "fileid": "https://r2.ropensci.org/3a4b061e7d85e5247d0fd036cf34be1f9a8785a53cccd3438718a0b3c5b8212a",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ccicb/actions/runs/39009942079"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.0.0.9000",
      "date": "2026-10-17T06:30:37.000Z",
      "commit": "adf0782554c2d7916169cf81f69d19247047b7eb",
      "fileid": "https://r2.ropensci.org/b0fa656e3d4a233a5646cce0a3ae7484159a235b0cd3c056e8d2ab60c7cc8a54",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ccicb/actions/runs/39009942079"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "0.0.0.9000",
      "date": "2026-10-17T06:30:32.000Z",
      "commit": "adf0782554c2d7916169cf81f69d19247047b7eb",
      "fileid": "https://r2.ropensci.org/a2833baee65051708da432d5d7757883d656a87240f89f3cd0fe9c5987ca1fa7",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ccicb/actions/runs/39009942079"
    }
  ]
}