{
  "_id": "6a49ab2eba590bf88b937de4",
  "Package": "TCGAgistic",
  "Title": "Easily access TCGA gistic data",
  "Version": "0.0.0.9000",
  "Authors@R": "person(\"Sam\", \"El-Kamand\", , \"selkamand@ccia.org.au\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"https://orcid.org/0000-0003-2270-8088\"))",
  "Description": "Streams TCGA GISTIC2 copynumber data into the R session.",
  "License": "MIT + file LICENSE",
  "Config/testthat/edition": "3",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.2.1",
  "biocViews": "",
  "URL": "https://github.com/CCICB/TCGAgistic",
  "BugReports": "https://github.com/CCICB/TCGAgistic/issues",
  "Config/pak/sysreqs": "libbz2-dev liblzma-dev xz-utils zlib1g-dev",
  "Repository": "https://ccicb.r-universe.dev",
  "Date/Publication": "2023-07-05 05:49:56 UTC",
  "RemoteUrl": "https://github.com/CCICB/TCGAgistic",
  "RemoteRef": "HEAD",
  "RemoteSha": "adf0782554c2d7916169cf81f69d19247047b7eb",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-19 08:04:45 UTC",
    "User": "root"
  },
  "Author": "Sam El-Kamand [aut, cre] (ORCID:\n<https://orcid.org/0000-0003-2270-8088>)",
  "Maintainer": "Sam El-Kamand <selkamand@ccia.org.au>",
  "_user": "ccicb",
  "_type": "src",
  "_file": "TCGAgistic_0.0.0.9000.tar.gz",
  "_fileid": "https://r2.ropensci.org/d77eb091b66469cd75867e72b76376317252258a1b449f5eaa55444b5415be3b",
  "_filesize": 140698,
  "_sha256": "d77eb091b66469cd75867e72b76376317252258a1b449f5eaa55444b5415be3b",
  "_expires": "2026-10-13T00:54:05.000Z",
  "_created": "2026-06-19T08:04:45.000Z",
  "_published": "2026-07-05T00:54:06.967Z",
  "_jobs": [
    {
      "job": 85180537398,
      "time": 149,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7744744247"
    },
    {
      "job": 85180537443,
      "time": 164,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7744748804"
    },
    {
      "job": 85180537401,
      "time": 177,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7744741043"
    },
    {
      "job": 85180537386,
      "time": 160,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7744738857"
    },
    {
      "job": 85180537153,
      "time": 198,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7744695075"
    },
    {
      "job": 85180537509,
      "time": 98,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7744728364"
    },
    {
      "job": 85180537494,
      "time": 85,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7744723923"
    },
    {
      "job": 85180537499,
      "time": 78,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7744721822"
    },
    {
      "job": 85180537354,
      "time": 98,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7744728125"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/ccicb/actions/runs/27813406335",
  "_status": "success",
  "_upstream": "https://github.com/CCICB/TCGAgistic",
  "_commit": {
    "id": "adf0782554c2d7916169cf81f69d19247047b7eb",
    "author": "selkamand <sam.elkamand@gmail.com>",
    "committer": "selkamand <sam.elkamand@gmail.com>",
    "message": "feat: added doi badge\n",
    "time": 1688536196
  },
  "_maintainer": {
    "name": "Sam El-Kamand",
    "email": "selkamand@ccia.org.au",
    "login": "selkamand",
    "bluesky": "@selkamand.bsky.social",
    "orcid": "0000-0003-2270-8088",
    "description": "",
    "uuid": 73202525
  },
  "_distro": "noble",
  "_registered": true,
  "_dependencies": [
    {
      "package": "maftools",
      "role": "Imports"
    },
    {
      "package": "pingr",
      "role": "Imports"
    },
    {
      "package": "rlang",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    }
  ],
  "_owner": "ccicb",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 6,
  "_contributors": [
    {
      "user": "selkamand",
      "count": 10,
      "uuid": 73202525
    }
  ],
  "_userbio": {
    "uuid": 66937852,
    "type": "organization",
    "name": "Computational Biology Group @ Children's Cancer Insitute",
    "followers": 21,
    "description": "The Computational Biology Group @ Children's Cancer Insitute develop better tools for precision medicine. WGS, RNAseq, multi-omics, health data"
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/TCGAgistic"
  },
  "_devurl": "https://github.com/ccicb/tcgagistic",
  "_searchresults": 4,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/readme.html",
    "extra/readme.md",
    "extra/TCGAgistic.html",
    "LICENSE",
    "manual.pdf"
  ],
  "_cranurl": false,
  "_exports": [
    "tcga_gistic_available",
    "tcga_gistic_load"
  ],
  "_help": [
    {
      "page": "tcga_gistic_available",
      "title": "List Available Datasets",
      "topics": [
        "tcga_gistic_available"
      ]
    },
    {
      "page": "tcga_gistic_load",
      "title": "Load TCGA GISTIC data",
      "topics": [
        "tcga_gistic_load"
      ]
    }
  ],
  "_readme": "https://github.com/CCICB/TCGAgistic/raw/HEAD/README.md",
  "_rundeps": [
    "cli",
    "data.table",
    "DNAcopy",
    "farver",
    "glue",
    "gtable",
    "labeling",
    "lattice",
    "lifecycle",
    "maftools",
    "Matrix",
    "pheatmap",
    "pingr",
    "processx",
    "ps",
    "R6",
    "RColorBrewer",
    "Rhtslib",
    "rlang",
    "scales",
    "survival",
    "viridisLite"
  ],
  "_score": 2.4771212547196626,
  "_indexed": true,
  "_nocasepkg": "tcgagistic",
  "_universes": [
    "ccicb",
    "selkamand"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.0.0.9000",
      "date": "2026-06-19T08:07:09.000Z",
      "distro": "noble",
      "commit": "adf0782554c2d7916169cf81f69d19247047b7eb",
      "fileid": "https://r2.ropensci.org/45c687ea1580191c8a95c91c558e53d1bd823975f088510aa4bbfc4d6278cdf7",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ccicb/actions/runs/27813406335"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.0.0.9000",
      "date": "2026-06-19T08:07:22.000Z",
      "distro": "noble",
      "commit": "adf0782554c2d7916169cf81f69d19247047b7eb",
      "fileid": "https://r2.ropensci.org/0f9b5140342f24b88c662a9ac613d850091924853560c7a7c85d96ac8b58367b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ccicb/actions/runs/27813406335"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.0.0.9000",
      "date": "2026-06-19T08:07:03.000Z",
      "commit": "adf0782554c2d7916169cf81f69d19247047b7eb",
      "fileid": "https://r2.ropensci.org/a191ce9983cddd8eef19ac33e2e1ffc94985f1e68291f1424d92d3885b2cc487",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ccicb/actions/runs/27813406335"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.0.0.9000",
      "date": "2026-06-19T08:06:55.000Z",
      "commit": "adf0782554c2d7916169cf81f69d19247047b7eb",
      "fileid": "https://r2.ropensci.org/7010a2d7e22e7d1e34fca3bd313fadc5c0e5d9c5765f3927f65343567f5a0b40",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ccicb/actions/runs/27813406335"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.0.0.9000",
      "date": "2026-06-19T08:06:44.000Z",
      "commit": "adf0782554c2d7916169cf81f69d19247047b7eb",
      "fileid": "https://r2.ropensci.org/d35a5fcda716a957cca16dc014211f3154967c19a49d9ae52d9a43c75ed35a45",
      "status": "success",
      "buildurl": "https://github.com/r-universe/ccicb/actions/runs/27813406335"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.0.0.9000",
      "date": "2026-06-19T08:06:00.000Z",
      "commit": "adf0782554c2d7916169cf81f69d19247047b7eb",
      "fileid": "https://r2.ropensci.org/77e9b219d7a235be5781e1e7766a76a6d9914ae72bc2d91418f879803f386c27",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ccicb/actions/runs/27813406335"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.0.0.9000",
      "date": "2026-06-19T08:05:55.000Z",
      "commit": "adf0782554c2d7916169cf81f69d19247047b7eb",
      "fileid": "https://r2.ropensci.org/bdc698549c1f55c8cf6c7944a466533c3d21b4037f6570cd5b918fec8b0a2311",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ccicb/actions/runs/27813406335"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.0.0.9000",
      "date": "2026-06-19T08:06:16.000Z",
      "commit": "adf0782554c2d7916169cf81f69d19247047b7eb",
      "fileid": "https://r2.ropensci.org/c5ef58e3d775a6dd398f0dce297e3bbe8b2ca157249d5c109b634a757dc5002b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ccicb/actions/runs/27813406335"
    }
  ]
}