| Title: | Provides easy access to PCAWG datasets |
|---|---|
| Description: | R package for loading PCAWG data into R as MAF objects. |
| Authors: | Sam El-Kamand [aut, cre] |
| Maintainer: | Sam El-Kamand <[email protected]> |
| License: | MIT + file LICENSE |
| Version: | 0.0.0.9000 |
| Built: | 2024-10-24 05:14:38 UTC |
| Source: | https://github.com/CCICB/PCAWGmutations |
List Available Datasets
pcawg_available()pcawg_available()
a dataframe listing available datasets
pcawg_available()pcawg_available()
Load PCAWG maf objects into R. Streams data from PCAWGmutationsDB repo
pcawg_load(cohort, verbose = TRUE)pcawg_load(cohort, verbose = TRUE)
cohort |
abbreviation of PCAWG project. See |
verbose |
verbose (flag) |
MAF object compatible with maftools
pcawg_load("Biliary-AdenoCA")pcawg_load("Biliary-AdenoCA")